Program blastn blastp blastx tblastn tblastx Database Pt.promoter-3kb Ptrichocarpa_210_v3.0.cds Ptrichocarpa_210_v3.0 Ptrichocarpa_210_v3.0.transcript Pt_V3_gDNA pure.1.5kb.promoter pure.3kb.promoter PdeH.genome PdeH.1.5kb.pure.promoter PdeH.cds PdeH.representative.cds PdeH.3kb.promoter.gene PdeH.gene PdeH.3kb.pure.promoter PdeM.genome PdeM.1.5kb.promoter.pure PdeM.3.0kb.promoter.pure PdeM.3kb.promoter.gene PdeM.cds PdeM.cds.representative PdeM.gene Ptrichocarpa_v3.0.protein TAIR10_pep PdeH.prot PdeH.representative.prot PdeM.prot PdeM.prot.representative Tse.genome.v1 Tse.long.cds.v1 Tse.all.cds.v1 Tse.prot.v1 717hap1_genome 717hap1_cds 717hap1_protein 717hap2_genome 717hap2_cds 717hap2_protein 84K.v3.1_genome 84K.v3.1_cds 84K.v3.1_transcripts 84K.v3.1_proteins
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:
